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Arabidopsis histidine kinase 4 sensor domain in complex with N-benzyladenine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3T4J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 16% PEG 3,350, 0.2 M Na malonate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.14 α = 90 b = 60.14 β = 90 c = 297.52 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.99988 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 46.11 99.4 0.089 17.02 10.8 62050 62050 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.82 91.6 0.495 2.8 6.9 4122
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3T4J 1.77 46.11 58941 58941 3107 99.37 0.18154 0.18154 0.18004 0.1851 0.20963 0.2137 RANDOM 21.828
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.84 0.42 0.84 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.62 r_dihedral_angle_4_deg 13.199 r_dihedral_angle_3_deg 13.132 r_dihedral_angle_1_deg 5.657 r_scangle_it 2.909 r_scbond_it 1.836 r_angle_refined_deg 1.386 r_mcangle_it 1.158 r_angle_other_deg 0.932 r_mcbond_it 0.674
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.62 r_dihedral_angle_4_deg 13.199 r_dihedral_angle_3_deg 13.132 r_dihedral_angle_1_deg 5.657 r_scangle_it 2.909 r_scbond_it 1.836 r_angle_refined_deg 1.386 r_mcangle_it 1.158 r_angle_other_deg 0.932 r_mcbond_it 0.674 r_mcbond_other 0.204 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4226 Nucleic Acid Atoms Solvent Atoms 514 Heterogen Atoms 41
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling