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Fructose-1,6-bisphosphate aldolase/phosphatase from Thermoproteus neutrophilus, FBP-bound form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3T2B PDB ENTRY 3T2B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 294 8% PEG3350, 0.1 M HEPES/NaOH, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.62 53.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.291 α = 90 b = 112.291 β = 90 c = 151.348 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL PSI PILATUS 6M 2010-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.36 54.78 99.9 0.073 0.073 18.5 9.2 103107 102981 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.36 1.39 99.9 0.424 0.424 5.1 8.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3T2B 1.36 54.78 2 97834 97834 5147 99.87 0.10475 0.10364 0.0988 0.1259 0.1202 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.014 r_dihedral_angle_4_deg 17.468 r_dihedral_angle_3_deg 14.154 r_scangle_it 8.104 r_dihedral_angle_1_deg 6.644 r_scbond_it 5.677 r_mcangle_it 3.695 r_mcbond_it 2.56 r_rigid_bond_restr 2.512 r_angle_refined_deg 2.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.014 r_dihedral_angle_4_deg 17.468 r_dihedral_angle_3_deg 14.154 r_scangle_it 8.104 r_dihedral_angle_1_deg 6.644 r_scbond_it 5.677 r_mcangle_it 3.695 r_mcbond_it 2.56 r_rigid_bond_restr 2.512 r_angle_refined_deg 2.365 r_angle_other_deg 1.178 r_mcbond_other 0.908 r_chiral_restr 0.159 r_bond_refined_d 0.031 r_gen_planes_refined 0.013 r_bond_other_d 0.004 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3057 Nucleic Acid Atoms Solvent Atoms 362 Heterogen Atoms 24
Software Software Software Name Purpose MAR345dtb data collection MOLREP phasing REFMAC refinement XDS data reduction SCALA data scaling