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TMAO-grown cubic insulin (porcine)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 Protein: 10 mg/mL in 50 mM CAPS pH 11;
Well: 1.2 M TMAO, 0.1 M malate, pH 5.5
, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.56 65.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.098 α = 90 b = 79.098 β = 90 c = 79.098 γ = 90
Symmetry Space Group I 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD OXFORD ONYX CCD 2010-08-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 18.644 99.9 0.132 9.2 6.8 4954 4954
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.21 100 0.417 0.417 1.8 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 18.64 4954 4687 240 99.98 0.17637 0.17384 0.1738 0.22334 0.2209 RANDOM 31.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.194 r_dihedral_angle_3_deg 12.086 r_dihedral_angle_1_deg 5.976 r_scangle_it 4.827 r_dihedral_angle_4_deg 3.579 r_scbond_it 2.75 r_mcangle_it 2.237 r_angle_refined_deg 1.478 r_mcbond_it 1.132 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.194 r_dihedral_angle_3_deg 12.086 r_dihedral_angle_1_deg 5.976 r_scangle_it 4.827 r_dihedral_angle_4_deg 3.579 r_scbond_it 2.75 r_mcangle_it 2.237 r_angle_refined_deg 1.478 r_mcbond_it 1.132 r_chiral_restr 0.122 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 403 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 5
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction CrysalisPro data collection CrysalisPro data reduction