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Structure of green-type Rubisco activase from tobacco
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 291 50 mM MES-Na pH 6.0 and 350 mM magnesium formate, vapor diffusion, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.67 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 103.635 α = 90 b = 103.635 β = 90 c = 56.675 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1.0332 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.949 51.848 99.9 0.062 0.062 14.6 4 7453 7453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.95 3.11 100 0.505 0.505 1.5 3.7 1065
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 2.95 20 7056 7051 350 99.93 0.2292 0.226 0.2198 0.2962 0.3026 RANDOM 117.6419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.81 0.9 1.81 -2.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.059 r_dihedral_angle_3_deg 21.922 r_dihedral_angle_4_deg 14.891 r_dihedral_angle_1_deg 6.81 r_scangle_it 1.983 r_angle_refined_deg 1.449 r_scbond_it 1.185 r_mcangle_it 0.771 r_mcbond_it 0.435 r_nbtor_refined 0.322
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.059 r_dihedral_angle_3_deg 21.922 r_dihedral_angle_4_deg 14.891 r_dihedral_angle_1_deg 6.81 r_scangle_it 1.983 r_angle_refined_deg 1.449 r_scbond_it 1.185 r_mcangle_it 0.771 r_mcbond_it 0.435 r_nbtor_refined 0.322 r_nbd_refined 0.267 r_symmetry_hbond_refined 0.228 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.091 r_bond_refined_d 0.014 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1919 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling SHELX phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHELXD phasing