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Small-molecule inhibitors of 14-3-3 protein-protein interactions from virtual screening
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277 0.095M HEPES Na salt, 0.19M calcium chloride, 5% glycerol, 25.6% PEG 400, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.71 54.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.09 α = 90 b = 112.3 β = 90 c = 62.37 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-05-20 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Multilayer mirrors (VariMax) 2011-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9778 SLS X10SA 2 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.62 45.42 98.6 0.09 13.87 6.73 37003 36467 -3 -3 24.424
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.62 1.7 96.7 0.388 4.04 4759
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 45.42 34642 34642 1824 100 0.1573 0.1573 0.1552 0.1535 0.1978 0.1941 RANDOM 20.171
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.87 -0.38 -0.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.176 r_dihedral_angle_4_deg 15.429 r_dihedral_angle_3_deg 13.707 r_scangle_it 5.875 r_dihedral_angle_1_deg 5.656 r_scbond_it 3.665 r_mcangle_it 2.306 r_angle_refined_deg 2.223 r_mcbond_it 1.405 r_chiral_restr 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.176 r_dihedral_angle_4_deg 15.429 r_dihedral_angle_3_deg 13.707 r_scangle_it 5.875 r_dihedral_angle_1_deg 5.656 r_scbond_it 3.665 r_mcangle_it 2.306 r_angle_refined_deg 2.223 r_mcbond_it 1.405 r_chiral_restr 0.164 r_bond_refined_d 0.026 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1807 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 42
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction