☰ Navigation Tabs
Crystal Structure of the Taurine catabolism dioxygenase, TauD from Mycobacterium marinum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 44 mg/ml. 20% PEG 3350, 200mM potassium citrate. 25% ethylene glycol (cryoprotection), pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.42 49.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.098 α = 90 b = 89.078 β = 90 c = 104.703 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2011-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.97 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 98.5 0.104 7.7 5.8 40618
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 90.5 0.457 4.8 1837
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.05 50 40461 2029 98.11 0.1879 0.1859 0.1975 0.2263 0.2365 RANDOM 25.4653
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.23 -1.78 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.556 r_dihedral_angle_4_deg 16.742 r_dihedral_angle_3_deg 13.568 r_dihedral_angle_1_deg 6.452 r_scangle_it 3.294 r_scbond_it 2.078 r_angle_refined_deg 1.357 r_mcangle_it 1.307 r_angle_other_deg 0.9 r_mcbond_it 0.699
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.556 r_dihedral_angle_4_deg 16.742 r_dihedral_angle_3_deg 13.568 r_dihedral_angle_1_deg 6.452 r_scangle_it 3.294 r_scbond_it 2.078 r_angle_refined_deg 1.357 r_mcangle_it 1.307 r_angle_other_deg 0.9 r_mcbond_it 0.699 r_mcbond_other 0.174 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3798 Nucleic Acid Atoms Solvent Atoms 323 Heterogen Atoms 13
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling