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Crystal structure of Acetyl-CoA acetyltransferase from Mycobacterium avium
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GOA PDB ENTRY 3GOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 290 Internal tracking number 220558g1. PACT G1. 0.2 M sodium fluoride, 0.1 M Bis Tris propane, pH 7.5, 20% PEG3350. MyavA.00781.a.A1 PW28926 at 28 mg/ml, VAPOR DIFFUSION, SITTING DROP, temperature 290K
Crystal Properties Matthews coefficient Solvent content 2.38 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.31 α = 90 b = 98.33 β = 90 c = 151.4 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-05-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 0.9774 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 47.541 97.4 0.063 10.53 3.1 42089 40680 -3 39.668
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 86.3 0.342 3.3 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3GOA 2.2 47.541 40680 2053 96.75 0.242 0.24 0.2471 0.274 0.2746 RANDOM 36.489
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.56 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.823 r_dihedral_angle_4_deg 15.677 r_dihedral_angle_3_deg 14.065 r_dihedral_angle_1_deg 5.933 r_scangle_it 2.757 r_scbond_it 1.748 r_angle_refined_deg 1.45 r_mcangle_it 1.134 r_angle_other_deg 0.939 r_mcbond_it 0.636
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.823 r_dihedral_angle_4_deg 15.677 r_dihedral_angle_3_deg 14.065 r_dihedral_angle_1_deg 5.933 r_scangle_it 2.757 r_scbond_it 1.748 r_angle_refined_deg 1.45 r_mcangle_it 1.134 r_angle_other_deg 0.939 r_mcbond_it 0.636 r_mcbond_other 0.15 r_chiral_restr 0.082 r_bond_refined_d 0.013 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5167 Nucleic Acid Atoms Solvent Atoms 165 Heterogen Atoms 1
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ADSC data collection XDS data reduction