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Crystal structure of NS3/4A protease variant D168A in complex with vaniprevir
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop, vapor diffusion 6.2 295 20-25% PEG 3350, 0.1M MES (pH 6.5), 4% ammonium sulfate, hanging drop, vapor diffusion, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.26 45.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.066 α = 90 b = 58.538 β = 90 c = 60.015 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2010-12-07 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 50 95.8 0.09 8.8 6.9 27508
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.61 93 0.506 6.8 2618
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 30.01 27380 1386 95.26 0.1657 0.1648 0.1755 0.1831 0.1928 RANDOM 18.8719
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.95 -0.63 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.345 r_dihedral_angle_4_deg 15.14 r_dihedral_angle_3_deg 10.831 r_dihedral_angle_1_deg 6.229 r_scangle_it 2.389 r_scbond_it 1.555 r_angle_refined_deg 1.391 r_mcangle_it 0.929 r_angle_other_deg 0.822 r_mcbond_it 0.521
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.345 r_dihedral_angle_4_deg 15.14 r_dihedral_angle_3_deg 10.831 r_dihedral_angle_1_deg 6.229 r_scangle_it 2.389 r_scbond_it 1.555 r_angle_refined_deg 1.391 r_mcangle_it 0.929 r_angle_other_deg 0.822 r_mcbond_it 0.521 r_mcbond_other 0.138 r_chiral_restr 0.079 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1439 Nucleic Acid Atoms Solvent Atoms 180 Heterogen Atoms 74
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction