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DNA binding domain of restriction endonuclease bound to DNA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 292 0.1 M Bis-Tris (pH 5.5), 0.2 M NH4Cl, 22% PEG3350, sitting drop, temperature 292K
Crystal Properties Matthews coefficient Solvent content 1.75 30.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.401 α = 90 b = 67.455 β = 90 c = 140.766 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 FLAT PANEL MAR555 2007-12-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.81480 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 35.29 94.4 0.129 0.129 11 4.2 21848
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.08 51 0.251 0.251 2.3 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MR THROUGHOUT 2.1 35.29 18102 18107 2005 98.21 0.19674 0.18993 0.189 0.25863 0.2607 RANDOM 27.534
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.5 2.96 -1.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.097 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 15.522 r_dihedral_angle_1_deg 6.323 r_scangle_it 2.995 r_scbond_it 2.411 r_mcangle_it 1.605 r_angle_refined_deg 1.395 r_mcbond_it 1.084 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.097 r_dihedral_angle_4_deg 18.31 r_dihedral_angle_3_deg 15.522 r_dihedral_angle_1_deg 6.323 r_scangle_it 2.995 r_scbond_it 2.411 r_mcangle_it 1.605 r_angle_refined_deg 1.395 r_mcbond_it 1.084 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2522 Nucleic Acid Atoms 488 Solvent Atoms 251 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction MOLREP phasing