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Structure of Pseudomonas aeruginosa PvdQ bound to NS2028
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L91 PDB ENTRY 3L91
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 10-15% PEG4000, 50-100 mM rubidium chloride, 50 mM HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3 58.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.565 α = 90 b = 165.828 β = 90 c = 93.951 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 CCD MARMOSAIC 325 mm CCD 2010-03-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-1 0.97945 SSRL BL9-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 39 97.2 0.076 9.9 63767 61883 -3 -3 30.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 82 0.476 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3L91 2 39 -3 61882 58774 3108 97.05 0.19796 0.19796 0.19667 0.1944 0.22179 0.2194 RANDOM 32.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.77 1.43 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.517 r_dihedral_angle_4_deg 14.831 r_dihedral_angle_3_deg 12.748 r_dihedral_angle_1_deg 5.788 r_scangle_it 2.681 r_scbond_it 1.584 r_angle_refined_deg 1.265 r_mcangle_it 0.979 r_mcbond_it 0.524 r_chiral_restr 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.517 r_dihedral_angle_4_deg 14.831 r_dihedral_angle_3_deg 12.748 r_dihedral_angle_1_deg 5.788 r_scangle_it 2.681 r_scbond_it 1.584 r_angle_refined_deg 1.265 r_mcangle_it 0.979 r_mcbond_it 0.524 r_chiral_restr 0.08 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5447 Nucleic Acid Atoms Solvent Atoms 237 Heterogen Atoms 87
Software Software Software Name Purpose Blu-Ice data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling