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Crystal structure of the LDL receptor tail in complex with autosomal recessive hypercholesterolemia PTB domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.1 M HEPES, 30% PEG6000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.96 37.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.097 α = 90 b = 59.095 β = 90 c = 77.083 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2010-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 23.563 96.5 0.054 13.7 4.8 27539 27539 3.4 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.44 98.9 0.36 0.36 2 4.6 4062
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.37 23.56 28787 27538 1437 95.66 0.1542 0.1515 0.1481 0.2058 0.2041 RANDOM 19.2488
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.59 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.515 r_dihedral_angle_4_deg 19.36 r_dihedral_angle_3_deg 14.173 r_scangle_it 7.585 r_dihedral_angle_1_deg 6.668 r_scbond_it 5.648 r_mcangle_it 3.884 r_rigid_bond_restr 2.791 r_mcbond_it 2.674 r_angle_refined_deg 2.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.515 r_dihedral_angle_4_deg 19.36 r_dihedral_angle_3_deg 14.173 r_scangle_it 7.585 r_dihedral_angle_1_deg 6.668 r_scbond_it 5.648 r_mcangle_it 3.884 r_rigid_bond_restr 2.791 r_mcbond_it 2.674 r_angle_refined_deg 2.05 r_chiral_restr 0.16 r_bond_refined_d 0.023 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1168 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection