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Monoclinic crystal structure of human pantothenate kinase 1 alpha
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 20% peg-1500, 0.2 M magnesium chloride, 0.1 M sodium cacodylate, pH 5.5, vapor diffusion, sitting drop
Crystal Properties Matthews coefficient Solvent content 2.8 55.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.68 α = 90 b = 66.68 β = 92.2 c = 88.16 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2011-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.0332 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.5 0.063 11.65 69596 -3 40.647
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 99.8 0.923 1.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 50 69492 3531 99.392 0.211 0.2092 0.212 0.242 0.2424 THIN SHELLS (SFTOOLS) 31.841
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.297 0.495 2.843 -1.508
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.759 r_dihedral_angle_4_deg 19.094 r_dihedral_angle_3_deg 14.607 r_dihedral_angle_1_deg 5.371 r_scangle_it 3.402 r_scbond_it 2.175 r_angle_refined_deg 1.471 r_mcangle_it 1.394 r_angle_other_deg 0.901 r_mcbond_it 0.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.759 r_dihedral_angle_4_deg 19.094 r_dihedral_angle_3_deg 14.607 r_dihedral_angle_1_deg 5.371 r_scangle_it 3.402 r_scbond_it 2.175 r_angle_refined_deg 1.471 r_mcangle_it 1.394 r_angle_other_deg 0.901 r_mcbond_it 0.779 r_mcbond_other 0.206 r_chiral_restr 0.086 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5454 Nucleic Acid Atoms Solvent Atoms 123 Heterogen Atoms 119
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction