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The crystal structure of XMRV protease complexed with pepstatin A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 3.5M NaFormate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.77 30.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.399 α = 90 b = 65.566 β = 90 c = 69.775 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MarCCD300 Mirror 2010-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 98.4 0.082 15.85 3.6 34189 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 92.7 0.311 2.38 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.5 14.84 32901 1073 97.87 0.17463 0.17394 0.1761 0.19642 0.2014 RANDOM 20.942
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.142 r_dihedral_angle_3_deg 13.729 r_dihedral_angle_4_deg 10.035 r_dihedral_angle_1_deg 7.17 r_scangle_it 6.557 r_scbond_it 4.088 r_mcangle_it 3.482 r_mcbond_it 2.031 r_angle_refined_deg 1.637 r_chiral_restr 0.107
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.142 r_dihedral_angle_3_deg 13.729 r_dihedral_angle_4_deg 10.035 r_dihedral_angle_1_deg 7.17 r_scangle_it 6.557 r_scbond_it 4.088 r_mcangle_it 3.482 r_mcbond_it 2.031 r_angle_refined_deg 1.637 r_chiral_restr 0.107 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1765 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 6
Software Software Software Name Purpose APS-ID-22 data collection REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling REFMAC phasing