☰ Navigation Tabs
Crystal Structure of drICE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I3O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 291 0.1M Acetate pH4.4, 1.0M (NH4)2SO4, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.2 44.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.025 α = 90 b = 56.025 β = 90 c = 287.441 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 2008-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL38B1 SPring-8 BL38B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 50 98.6 27960 13.4 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1I3O 2.68 45.97 26529 1400 98.58 0.1684 0.16508 0.1631 0.23517 0.2334 RANDOM 43.349
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -14.79 -14.79 29.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.088 r_dihedral_angle_3_deg 25.652 r_dihedral_angle_4_deg 24.667 r_dihedral_angle_1_deg 12.709 r_scangle_it 5.683 r_scbond_it 3.666 r_mcangle_it 2.367 r_mcbond_it 1.263 r_angle_refined_deg 0.714 r_chiral_restr 0.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.088 r_dihedral_angle_3_deg 25.652 r_dihedral_angle_4_deg 24.667 r_dihedral_angle_1_deg 12.709 r_scangle_it 5.683 r_scbond_it 3.666 r_mcangle_it 2.367 r_mcbond_it 1.263 r_angle_refined_deg 0.714 r_chiral_restr 0.056 r_gen_planes_refined 0.015 r_bond_refined_d 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5763 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement