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Crystal Structure of autoinhibited dIAP1-BIR1 domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SDZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 291 100mM Bis-Tris pH 5.4, 0.2M (NH4)2SO4, 3%( vol/vol) CH3OH, 22% (wt/vol) Polyethylene Glycol 3350 , VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.14 42.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.782 α = 90 b = 99.782 β = 90 c = 71.344 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.4 30880 11.5 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SDZ 2.4 32.98 29236 1622 99.33 0.14959 0.14575 0.1444 0.21709 0.2128 RANDOM 29.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.83 7.83 -15.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.179 r_dihedral_angle_3_deg 24.359 r_dihedral_angle_4_deg 19.789 r_dihedral_angle_1_deg 12.107 r_scangle_it 4.733 r_scbond_it 3.611 r_mcangle_it 2.091 r_mcbond_it 1.366 r_angle_refined_deg 0.99 r_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.179 r_dihedral_angle_3_deg 24.359 r_dihedral_angle_4_deg 19.789 r_dihedral_angle_1_deg 12.107 r_scangle_it 4.733 r_scbond_it 3.611 r_mcangle_it 2.091 r_mcbond_it 1.366 r_angle_refined_deg 0.99 r_chiral_restr 0.083 r_gen_planes_refined 0.02 r_bond_refined_d 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4790 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement