3SHE

Novel ATP-competitive MK2 inhibitors with potent biochemical and cell-based activity throughout the series


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP52930.1 M citrate/Bis-tris propane, 12% PEG3350, 10 mM DTT, 1 mM inhibitor, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5351.37

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.946α = 90
b = 76.026β = 106.68
c = 60.288γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102010-04-16MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2544.699.80.06210.13.71732517325
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.3399.90.4462.33.71712

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.2527.08163931639389399.830.247810.246490.27129RANDOM83.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.010.010.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.495
r_dihedral_angle_3_deg16.602
r_dihedral_angle_4_deg14.952
r_dihedral_angle_1_deg5.401
r_angle_refined_deg1.027
r_scangle_it1.006
r_angle_other_deg0.822
r_scbond_it0.596
r_mcangle_it0.57
r_mcbond_it0.307
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.495
r_dihedral_angle_3_deg16.602
r_dihedral_angle_4_deg14.952
r_dihedral_angle_1_deg5.401
r_angle_refined_deg1.027
r_scangle_it1.006
r_angle_other_deg0.822
r_scbond_it0.596
r_mcangle_it0.57
r_mcbond_it0.307
r_chiral_restr0.059
r_mcbond_other0.04
r_bond_refined_d0.006
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2185
Nucleic Acid Atoms
Solvent Atoms31
Heterogen Atoms34

Software

Software
Software NamePurpose
ADSCdata collection
REFMACrefinement
d*TREKdata reduction
d*TREKdata scaling
REFMACphasing