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Laminin G like domain 3 from human perlecan
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 293 3.5M sodium formate, 0.1 sodium acetate pH4.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.71 27.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.95 α = 90 b = 54.655 β = 90 c = 64.353 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 41.67 97.1 23231 22563 1 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 33.9 23231 22563 1155 97.12 0.1787 0.1768 0.2129 0.2158 RANDOM 16.5469
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.22 -0.33 0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.397 r_dihedral_angle_4_deg 15.482 r_dihedral_angle_3_deg 11.714 r_dihedral_angle_1_deg 7.401 r_scangle_it 5.711 r_scbond_it 3.695 r_mcangle_it 2.422 r_angle_refined_deg 2.234 r_mcbond_it 1.448 r_chiral_restr 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.397 r_dihedral_angle_4_deg 15.482 r_dihedral_angle_3_deg 11.714 r_dihedral_angle_1_deg 7.401 r_scangle_it 5.711 r_scbond_it 3.695 r_mcangle_it 2.422 r_angle_refined_deg 2.234 r_mcbond_it 1.448 r_chiral_restr 0.158 r_bond_refined_d 0.028 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1451 Nucleic Acid Atoms Solvent Atoms 202 Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction