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Crystal Structure of TM0159 with bound IMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 298 PEG3350, L-Proline, Tris-HCl pH 7.4, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.28 46.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.4 α = 90 b = 75.99 β = 90 c = 157.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 325 mm CCD 2010-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 50 99.8 48209 48090 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.2 100 3.05 3160
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 28.95 48086 2405 100 0.2229 0.22 0.217 0.2784 0.2765 RANDOM 46.8774
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 0.07 -0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.561 r_dihedral_angle_3_deg 19.109 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_1_deg 6.7 r_scangle_it 4.922 r_scbond_it 3.124 r_angle_refined_deg 1.877 r_mcangle_it 1.858 r_mcbond_it 1.049 r_chiral_restr 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.561 r_dihedral_angle_3_deg 19.109 r_dihedral_angle_4_deg 19.08 r_dihedral_angle_1_deg 6.7 r_scangle_it 4.922 r_scbond_it 3.124 r_angle_refined_deg 1.877 r_mcangle_it 1.858 r_mcbond_it 1.049 r_chiral_restr 0.13 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5949 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 112
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction XSCALE data scaling