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Crystal structure of a putative acetyltransferase (DR_1678) from Deinococcus radiodurans R1 at 1.19 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 0.2M Ca(OAc)2, 10.0% PEG-8000, 0.1M Imidazole pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.07 59.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 75.168 α = 90 b = 102.524 β = 90 c = 51.511 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (ho rizontal focusing) 2007-07-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97944,0.97916 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.19 39.253 99.2 0.055 15.9 3.6 63440 -3 9.484
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.19 1.22 98 0.525 0.525 2.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.19 39.253 63421 3215 99.05 0.1358 0.1351 0.1361 0.1504 0.1533 RANDOM 16.7661
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.28 0.06 -0.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.078 r_dihedral_angle_4_deg 18.376 r_dihedral_angle_3_deg 12.545 r_sphericity_free 9.935 r_dihedral_angle_1_deg 6.394 r_scangle_it 4.755 r_sphericity_bonded 4.691 r_scbond_it 3.344 r_mcangle_it 2.471 r_angle_refined_deg 1.833
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.078 r_dihedral_angle_4_deg 18.376 r_dihedral_angle_3_deg 12.545 r_sphericity_free 9.935 r_dihedral_angle_1_deg 6.394 r_scangle_it 4.755 r_sphericity_bonded 4.691 r_scbond_it 3.344 r_mcangle_it 2.471 r_angle_refined_deg 1.833 r_mcbond_it 1.653 r_rigid_bond_restr 1.591 r_angle_other_deg 1.04 r_mcbond_other 0.82 r_chiral_restr 0.107 r_bond_refined_d 0.015 r_gen_planes_refined 0.01 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1111 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 50
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing