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Crystal Structure of CerJ from Streptomyces tendae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 22.5% PEG 4000, 100 mM Tris/HCl pH 8.5, 200 mM sodium acetate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.23 44.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.41 α = 90 b = 105.41 β = 90 c = 120.92 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-09-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.000, 1.700, 0.950 SLS X06DA
Data Collection Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.1 99.9 0.576 4.4 8.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 29.19 44481 1854 100 0.16409 0.16222 0.1701 0.20843 0.2098 RANDOM 31.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.82 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.764 r_dihedral_angle_4_deg 17.111 r_dihedral_angle_3_deg 14.568 r_dihedral_angle_1_deg 6.014 r_scangle_it 3.981 r_scbond_it 2.957 r_mcangle_it 2.644 r_mcbond_it 1.958 r_angle_refined_deg 1.524 r_angle_other_deg 0.934
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.764 r_dihedral_angle_4_deg 17.111 r_dihedral_angle_3_deg 14.568 r_dihedral_angle_1_deg 6.014 r_scangle_it 3.981 r_scbond_it 2.957 r_mcangle_it 2.644 r_mcbond_it 1.958 r_angle_refined_deg 1.524 r_angle_other_deg 0.934 r_mcbond_other 0.868 r_chiral_restr 0.096 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5034 Nucleic Acid Atoms Solvent Atoms 414 Heterogen Atoms 20
Software Software Software Name Purpose SHELXD phasing SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling