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The crystal structure of AT5g51720 (AT-NEET)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3EW0 PDB ENTRY 3ew0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 100mM ZnAc2 and 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.25 45.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.548 α = 90 b = 60.09 β = 90 c = 66.383 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.92 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 44.55 94.9 16531 16531
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3ew0 1.75 44.55 15592 15592 836 94.7 0.183 0.181 0.18 0.227 0.2268 RANDOM 28.09
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 -0.96 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.253 r_dihedral_angle_3_deg 11.941 r_dihedral_angle_4_deg 7.279 r_dihedral_angle_1_deg 5.884 r_scangle_it 4.589 r_scbond_it 3.108 r_mcangle_it 2.107 r_angle_refined_deg 1.855 r_rigid_bond_restr 1.505 r_mcbond_it 1.275
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.253 r_dihedral_angle_3_deg 11.941 r_dihedral_angle_4_deg 7.279 r_dihedral_angle_1_deg 5.884 r_scangle_it 4.589 r_scbond_it 3.108 r_mcangle_it 2.107 r_angle_refined_deg 1.855 r_rigid_bond_restr 1.505 r_mcbond_it 1.275 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1004 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 10
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling