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Transaldolase variant Lys86Ala from Thermoplasma acidophilum in complex with glycerol and citrate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3S0C PDB entry 3S0C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 4.5 291 PEG 6000, GOL, pH 4.5, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.45 49.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.08 α = 90 b = 168.67 β = 90 c = 97.92 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2008-06-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.74 99.7 0.044 25.62 5 110627 110627 -3 30.382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 99.9 0.459 3.88
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 3S0C 1.8 19.447 1.35 110566 110566 5529 99.79 0.1778 0.1762 0.1718 0.2083 0.2035 RANDOM 29.4703
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.3179 -2.641 -3.6769
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.665 f_angle_d 1.151 f_chiral_restr 0.063 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8575 Nucleic Acid Atoms Solvent Atoms 777 Heterogen Atoms 95
Software Software Software Name Purpose XSCALE data scaling PHENIX refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction PHENIX phasing