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Transaldolase wt of Thermoplasma acidophilum
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WX0 PDB entry 1WX0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 4.5 291 PEG 6000, GOL, pH 4.5, hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.62 53.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 149.044 α = 90 b = 172.024 β = 90 c = 100.271 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-02-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.91841 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 34.199 98.5 0.039 21.32 4.03 121135 121135 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.78 1.83 96.3 0.438 2.61
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 1WX0 1.78 34.191 1.99 121120 121119 6055 98.54 0.1962 0.1945 0.1885 0.2291 0.2233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.2288 -5.3163 -2.9125
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.944 f_angle_d 1.108 f_chiral_restr 0.071 f_bond_d 0.009 f_plane_restr 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8540 Nucleic Acid Atoms Solvent Atoms 972 Heterogen Atoms 6
Software Software Software Name Purpose XSCALE data processing PHENIX refinement PDB_EXTRACT data extraction MAR345dtb data collection XDS data reduction XSCALE data scaling PHASER phasing