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Crystal Structure of apo-form of Human Glycolipid Transfer Protein at 1.5 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 273 15-20%PEG 8000, 0.1M MES pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.62 53.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.205 α = 90 b = 82.205 β = 90 c = 148.275 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-03-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9754 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 50 99.33 0.072 15.6 76833 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 98.1 0.249 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 15 76832 4064 99.15 0.14564 0.14405 0.17583 0.1804 RANDOM 20.878
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.71 r_sphericity_free 29.705 r_dihedral_angle_4_deg 15.872 r_sphericity_bonded 12.596 r_dihedral_angle_3_deg 12.537 r_dihedral_angle_1_deg 4.888 r_scangle_it 4.265 r_scbond_it 3.237 r_rigid_bond_restr 2.051 r_mcangle_it 1.998
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.71 r_sphericity_free 29.705 r_dihedral_angle_4_deg 15.872 r_sphericity_bonded 12.596 r_dihedral_angle_3_deg 12.537 r_dihedral_angle_1_deg 4.888 r_scangle_it 4.265 r_scbond_it 3.237 r_rigid_bond_restr 2.051 r_mcangle_it 1.998 r_mcbond_it 1.737 r_angle_refined_deg 1.395 r_mcbond_other 0.714 r_symmetry_hbond_refined 0.276 r_nbd_refined 0.233 r_symmetry_vdw_refined 0.213 r_nbtor_refined 0.188 r_nbd_other 0.185 r_symmetry_vdw_other 0.183 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.134 r_nbtor_other 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.008 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3325 Nucleic Acid Atoms Solvent Atoms 656 Heterogen Atoms 5
Software Software Software Name Purpose ADSC data collection AMoRE phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling