☰ Navigation Tabs
Crystal Structure of Ypt32 in Complex with GppNHp
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 PEG 6000, MgCl2, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.58 52.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.09 α = 90 b = 49.89 β = 90 c = 90.66 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-07-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 45.33 99.6 0.069 23.57 14958 -3 17.21
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 100 0.446 4.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 40 14958 757 99.6 0.196 0.194 0.2186 0.24 0.2717 RANDOM 28.928
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.28 1.57 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.081 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 15.803 r_dihedral_angle_1_deg 5.268 r_scangle_it 2.109 r_angle_refined_deg 2.014 r_scbond_it 1.367 r_mcangle_it 0.871 r_mcbond_it 0.487 r_chiral_restr 0.207
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.081 r_dihedral_angle_4_deg 20.262 r_dihedral_angle_3_deg 15.803 r_dihedral_angle_1_deg 5.268 r_scangle_it 2.109 r_angle_refined_deg 2.014 r_scbond_it 1.367 r_mcangle_it 0.871 r_mcbond_it 0.487 r_chiral_restr 0.207 r_bond_refined_d 0.011 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1415 Nucleic Acid Atoms Solvent Atoms 192 Heterogen Atoms 65
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement XDS data reduction XSCALE data scaling