☰ Navigation Tabs
Crystal structure of E.coli biotin carboxylase in complex with two ADP and two Ca ions
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 295 PEG3350, CaCl2, pH 8.5, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.14 42.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.18 α = 90 b = 58.843 β = 94.24 c = 85.083 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X4A NSLS X4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 84.82 56480
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.99 30 56444 2862 98.1 0.1736 0.1707 0.1723 0.2269 0.2274 RANDOM 20.6755
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.1 0.41 0.81 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.568 r_dihedral_angle_4_deg 15.667 r_dihedral_angle_3_deg 13.884 r_dihedral_angle_1_deg 5.309 r_scangle_it 2.752 r_scbond_it 1.702 r_angle_refined_deg 1.312 r_mcangle_it 1.016 r_mcbond_it 0.648 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.568 r_dihedral_angle_4_deg 15.667 r_dihedral_angle_3_deg 13.884 r_dihedral_angle_1_deg 5.309 r_scangle_it 2.752 r_scbond_it 1.702 r_angle_refined_deg 1.312 r_mcangle_it 1.016 r_mcbond_it 0.648 r_nbtor_refined 0.297 r_nbd_refined 0.193 r_symmetry_hbond_refined 0.19 r_symmetry_vdw_refined 0.175 r_xyhbond_nbd_refined 0.151 r_metal_ion_refined 0.13 r_chiral_restr 0.088 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6854 Nucleic Acid Atoms Solvent Atoms 905 Heterogen Atoms 115
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction