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The structure of a putative enoyl-CoA hydratase/isomerase from Mycobacterium abscessus ATCC 19977 / DSM 44196
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3R9T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9.5 289 20% PEG8000, 0.1M CHES pH9.5. Cryo protected with 25% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.2 44.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.85 α = 90 b = 121.67 β = 96.65 c = 64.55 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2011-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 64.12 96.9 0.063 18.07 47423 -3 18.605
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 76 0.174 5.92
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3R9T 2 19.97 46990 2371 95.05 0.1521 0.1497 0.1608 0.1954 0.2032 RANDOM 17.9431
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.63 -0.03 1.36 -0.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.838 r_dihedral_angle_4_deg 20.079 r_dihedral_angle_3_deg 12.201 r_dihedral_angle_1_deg 6.597 r_scangle_it 3.176 r_scbond_it 1.876 r_angle_refined_deg 1.276 r_mcangle_it 1.099 r_angle_other_deg 0.904 r_mcbond_it 0.604
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.838 r_dihedral_angle_4_deg 20.079 r_dihedral_angle_3_deg 12.201 r_dihedral_angle_1_deg 6.597 r_scangle_it 3.176 r_scbond_it 1.876 r_angle_refined_deg 1.276 r_mcangle_it 1.099 r_angle_other_deg 0.904 r_mcbond_it 0.604 r_mcbond_other 0.15 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5377 Nucleic Acid Atoms Solvent Atoms 521 Heterogen Atoms 31
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction