☰ Navigation Tabs
Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Nicotinamide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O8N PDB ENTRY 2O8N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 293 0.1 M SODIUM ACETATE, 1.5 M AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.02 59.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 125.115 α = 90 b = 125.115 β = 90 c = 119.801 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r MIRRORS 2009-06-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97918 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 84.4 0.086 0.086 39.119 6.8 52928 52928 -3 89.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.85 95.4 0.568 0.568 2.777 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2O8N 2.8 50 7494 360 82.74 0.21 0.208 0.2101 0.243 0.2583 RANDOM 151.936
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.85 -3.42 -6.85 10.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.338 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_4_deg 10.253 r_dihedral_angle_1_deg 7.151 r_scangle_it 4.979 r_mcangle_it 4.469 r_angle_other_deg 4.007 r_scbond_it 3.07 r_mcbond_it 2.588 r_angle_refined_deg 1.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.338 r_dihedral_angle_3_deg 17.655 r_dihedral_angle_4_deg 10.253 r_dihedral_angle_1_deg 7.151 r_scangle_it 4.979 r_mcangle_it 4.469 r_angle_other_deg 4.007 r_scbond_it 3.07 r_mcbond_it 2.588 r_angle_refined_deg 1.457 r_chiral_restr 0.073 r_bond_refined_d 0.014 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_mcbond_other 0.003 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1808 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing