☰ Navigation Tabs
Structural and functional relationships between the lectin and arm domains of calreticulin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O0V PDB ENTRY 3O0V
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 295 25% PEG 1500, 0.1 M MIB buffer, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.19 43.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.062 α = 90 b = 71.701 β = 90 c = 108.386 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2010-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 0.9779 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 96.9 10651 10321 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.55 2.59 77.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3O0V 2.57 43.23 1 10651 10321 516 96.42 0.23663 0.23416 0.2349 0.28558 0.2836 RANDOM 64.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.87 0.23 1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_dihedral_angle_3_deg 15.761 r_dihedral_angle_4_deg 14.126 r_dihedral_angle_1_deg 7.05 r_angle_refined_deg 1.061 r_scangle_it 0.626 r_mcangle_it 0.377 r_scbond_it 0.375 r_nbtor_refined 0.303 r_mcbond_it 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.293 r_dihedral_angle_3_deg 15.761 r_dihedral_angle_4_deg 14.126 r_dihedral_angle_1_deg 7.05 r_angle_refined_deg 1.061 r_scangle_it 0.626 r_mcangle_it 0.377 r_scbond_it 0.375 r_nbtor_refined 0.303 r_mcbond_it 0.212 r_symmetry_vdw_refined 0.191 r_nbd_refined 0.175 r_metal_ion_refined 0.146 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.119 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2332 Nucleic Acid Atoms Solvent Atoms 26 Heterogen Atoms 1
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling