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Crystal structure of glycoprotein GPIb ectodomain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.6M(NH4)2SO4, 0.4M LiCl, 0.1M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.73 54.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.506 α = 90 b = 34.764 β = 92.15 c = 71.532 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 193 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.245 54.3 99.9 78352
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.245 54.3 75004 3906 92.69 0.202 0.20084 0.2006 0.22433 0.2243 RANDOM 15.071
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -0.09 0.08 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.146 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_4_deg 8.749 r_dihedral_angle_1_deg 6.449 r_scangle_it 3.912 r_scbond_it 2.761 r_angle_refined_deg 2.489 r_mcangle_it 2.415 r_mcbond_it 1.505 r_chiral_restr 0.163
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.146 r_dihedral_angle_3_deg 12.838 r_dihedral_angle_4_deg 8.749 r_dihedral_angle_1_deg 6.449 r_scangle_it 3.912 r_scbond_it 2.761 r_angle_refined_deg 2.489 r_mcangle_it 2.415 r_mcbond_it 1.505 r_chiral_restr 0.163 r_bond_refined_d 0.03 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1782 Nucleic Acid Atoms Solvent Atoms 448 Heterogen Atoms 70
Software Software Software Name Purpose MrBUMP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling