☰ Navigation Tabs
Molecular mechanisms of viral and host-cell substrate recognition by HCV NS3/4A protease
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3M5M PDB ENTRY 3M5M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop, vapor diffusion 6.2 295 20-25% PEG 3350, 0.1M MES (pH 6.5), 4% ammonium sulfate, hanging drop, vapor diffusion, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.29 46.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.85 α = 90 b = 58.581 β = 90 c = 60.901 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2010-07-21 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 93.1 0.048 14.8 4.2 45595
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.35 97.1 0.377 4 4679
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3M5M 1.3 26.62 45433 2301 92.69 0.1623 0.1608 0.1935 0.191 0.2185 RANDOM 11.9581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.88 0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.144 r_dihedral_angle_4_deg 15.623 r_dihedral_angle_3_deg 11.379 r_dihedral_angle_1_deg 5.963 r_scangle_it 3.347 r_scbond_it 2.286 r_mcangle_it 1.651 r_angle_refined_deg 1.294 r_mcbond_it 1.005 r_rigid_bond_restr 0.844
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.144 r_dihedral_angle_4_deg 15.623 r_dihedral_angle_3_deg 11.379 r_dihedral_angle_1_deg 5.963 r_scangle_it 3.347 r_scbond_it 2.286 r_mcangle_it 1.651 r_angle_refined_deg 1.294 r_mcbond_it 1.005 r_rigid_bond_restr 0.844 r_angle_other_deg 0.807 r_mcbond_other 0.273 r_chiral_restr 0.078 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1465 Nucleic Acid Atoms Solvent Atoms 166 Heterogen Atoms 1
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction