☰ Navigation Tabs
Crystal Structure of human CDC-like kinase 3 isoform in complex with leucettine L41
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2EXE Ensemble of 2EXE, 2EU9, 1Z57 experimental model PDB 2EU9 Ensemble of 2EXE, 2EU9, 1Z57 experimental model PDB 1Z57 Ensemble of 2EXE, 2EU9, 1Z57
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.20M NaNO3
0.1M BTProp pH 7.5
20.0% PEG 3350
10.0% EtGly, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.92 57.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.67 α = 90 b = 122.42 β = 92.6 c = 69.28 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2009-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.97924 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 36.263 98.2 0.091 0.091 8.4 3.9 60645 59553 36.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.09 2.2 97.1 0.755 0.755 1 3.9 8602
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Ensemble of 2EXE, 2EU9, 1Z57 2.09 36.263 60691 59520 1988 98.07 0.1822 0.1822 0.1809 0.2193 0.2252 RANDOM 45.8424
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.79 -0.24 0.93 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.719 r_dihedral_angle_4_deg 20.736 r_dihedral_angle_3_deg 14.863 r_scangle_it 9.579 r_scbond_it 7.791 r_dihedral_angle_1_deg 6.021 r_mcangle_it 4.908 r_mcbond_it 3.4 r_angle_refined_deg 1.508 r_mcbond_other 1.452
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.719 r_dihedral_angle_4_deg 20.736 r_dihedral_angle_3_deg 14.863 r_scangle_it 9.579 r_scbond_it 7.791 r_dihedral_angle_1_deg 6.021 r_mcangle_it 4.908 r_mcbond_it 3.4 r_angle_refined_deg 1.508 r_mcbond_other 1.452 r_angle_other_deg 0.923 r_chiral_restr 0.095 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5603 Nucleic Acid Atoms Solvent Atoms 246 Heterogen Atoms 46
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection MOSFLM data reduction