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Structure of EchA1_1 from Mycobacterium paratuberculosis ATCC BAA-968 / K-10
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1UIY PDB ENTRY 1UIY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 289 25% PEG1500, 0.1 M PCTP buffer, pH 9, cryoprotectant: 25% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.16 42.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.092 α = 90 b = 78.274 β = 115.13 c = 75.552 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2011-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 100 0.062 13.4 4.6 72409
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 100 0.392 4.2 3591
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1UIY 1.75 30 72306 3647 99.77 0.1814 0.1802 0.1991 0.2042 0.2218 RANDOM 31.7326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.14 0.48 0.94 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 13.351 r_dihedral_angle_1_deg 5.43 r_scangle_it 2.791 r_scbond_it 1.673 r_angle_refined_deg 1.348 r_mcangle_it 1.126 r_angle_other_deg 0.933 r_mcbond_it 0.613
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 19.504 r_dihedral_angle_3_deg 13.351 r_dihedral_angle_1_deg 5.43 r_scangle_it 2.791 r_scbond_it 1.673 r_angle_refined_deg 1.348 r_mcangle_it 1.126 r_angle_other_deg 0.933 r_mcbond_it 0.613 r_mcbond_other 0.113 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5635 Nucleic Acid Atoms Solvent Atoms 500 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction