☰ Navigation Tabs
Structure of a carnitinyl-CoA dehydratase from Mycobacterium avium 104
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3R0O PDB ENTRY 3R0O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 289 20% PEG3350, cryoprotectant: 25% ethylene glycol, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.42 49.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.74 α = 90 b = 74.961 β = 112.76 c = 76.982 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2011-01-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.5 0.095 8 3.7 40794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 99.8 0.374 3.7 2046
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3R0O 2.2 50 40699 2051 99.2 0.1768 0.1742 0.1801 0.2265 0.2284 RANDOM 43.6708
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.82 0.57 -1.71 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.853 r_dihedral_angle_4_deg 17.778 r_dihedral_angle_3_deg 13.572 r_dihedral_angle_1_deg 5.68 r_scangle_it 2.797 r_scbond_it 1.734 r_angle_refined_deg 1.241 r_mcangle_it 1.002 r_angle_other_deg 0.921 r_mcbond_it 0.538
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.853 r_dihedral_angle_4_deg 17.778 r_dihedral_angle_3_deg 13.572 r_dihedral_angle_1_deg 5.68 r_scangle_it 2.797 r_scbond_it 1.734 r_angle_refined_deg 1.241 r_mcangle_it 1.002 r_angle_other_deg 0.921 r_mcbond_it 0.538 r_mcbond_other 0.119 r_chiral_restr 0.071 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5518 Nucleic Acid Atoms Solvent Atoms 453 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction