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Pseudomonas aeruginosa DapD (PA3666) in complex with L-2-aminopimelate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 19-20% of PEG3350, 0.3-0.4M succinate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.62 53.12
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.038 α = 90 b = 102.002 β = 89.97 c = 134.903 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 1.00 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 37 95.9 0.144 0.144 6.7 3.4 72498 72498
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.51 36.88 68844 68844 3632 93.94 0.25149 0.25019 0.2422 0.27567 0.2635 RANDOM 21.868
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.7 0.7 0.72 0.98
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 16.075 r_dihedral_angle_1_deg 6.068 r_angle_refined_deg 1.242 r_scangle_it 1.103 r_angle_other_deg 0.968 r_scbond_it 0.648 r_mcangle_it 0.455 r_mcbond_it 0.254
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.965 r_dihedral_angle_4_deg 18.114 r_dihedral_angle_3_deg 16.075 r_dihedral_angle_1_deg 6.068 r_angle_refined_deg 1.242 r_scangle_it 1.103 r_angle_other_deg 0.968 r_scbond_it 0.648 r_mcangle_it 0.455 r_mcbond_it 0.254 r_chiral_restr 0.084 r_mcbond_other 0.051 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14081 Nucleic Acid Atoms Solvent Atoms 256 Heterogen Atoms 60
Software Software Software Name Purpose MxCuBE data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling