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Pseudomonas aeruginosa DapD (PA3666) in complex with D-2-aminopimelate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 293 19-20% of PEG3350, 0.3-0.4M succinate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.65 53.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 83.343 α = 90 b = 101.931 β = 89.97 c = 135.686 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2009-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 1.04 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.88 22 91.2 0.059 0.059 9.8 2.5 173938 173938
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.88 1.98 72.8 0.333 0.333 2.3 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.89 21.83 165139 165139 8767 96.06 0.19755 0.19557 0.23532 0.2548 RANDOM 23.44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -6.02 -0.88 -5.27 11.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.008 r_dihedral_angle_4_deg 22.579 r_dihedral_angle_3_deg 15.064 r_dihedral_angle_1_deg 6.056 r_scangle_it 1.549 r_angle_refined_deg 1.145 r_scbond_it 0.989 r_angle_other_deg 0.874 r_mcangle_it 0.676 r_mcbond_it 0.391
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.008 r_dihedral_angle_4_deg 22.579 r_dihedral_angle_3_deg 15.064 r_dihedral_angle_1_deg 6.056 r_scangle_it 1.549 r_angle_refined_deg 1.145 r_scbond_it 0.989 r_angle_other_deg 0.874 r_mcangle_it 0.676 r_mcbond_it 0.391 r_mcbond_other 0.13 r_chiral_restr 0.067 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14092 Nucleic Acid Atoms Solvent Atoms 1019 Heterogen Atoms 84
Software Software Software Name Purpose MxCuBE data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling