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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - WT/Glycolate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 16-20% PEG3350, 0.2M NH4Cl, 0.1M sodium cacodylate. Microseeded using parent crystals grown with the supplementation of 4% sucrose, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.38 48.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.08 α = 90 b = 122.12 β = 90 c = 132.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2006-08-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.90020 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.57 89.8 96.9 0.064 17.91 177077 -3 24.041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.57 1.61 78.6 0.684 2.24
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 18.23 141042 7083 98.67 0.1787 0.1766 0.2182 0.2224 RANDOM 17.8022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.5 0.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.163 r_dihedral_angle_4_deg 16.679 r_dihedral_angle_3_deg 13.832 r_dihedral_angle_1_deg 6.41 r_scangle_it 4.654 r_scbond_it 3.089 r_mcangle_it 2.069 r_angle_refined_deg 1.963 r_mcbond_it 1.297 r_angle_other_deg 1.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.163 r_dihedral_angle_4_deg 16.679 r_dihedral_angle_3_deg 13.832 r_dihedral_angle_1_deg 6.41 r_scangle_it 4.654 r_scbond_it 3.089 r_mcangle_it 2.069 r_angle_refined_deg 1.963 r_mcbond_it 1.297 r_angle_other_deg 1.067 r_mcbond_other 0.444 r_chiral_restr 0.131 r_bond_refined_d 0.025 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9458 Nucleic Acid Atoms Solvent Atoms 1068 Heterogen Atoms 23
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing