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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - His280Asn/Fluoroacetate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 15-24% PEG3350, 0.1-0.2M CaCl2 and 0.1M Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.01 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.76 α = 90 b = 79.33 β = 103.2 c = 85.01 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2010-04-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C 0.978700 APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.15 82.76 90.6 0.049 15.24 172884 -3 13.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.15 1.18 71.2 0.17 3.35
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.15 41.38 172880 8724 90.59 0.1528 0.151 0.187 0.2 RANDOM 13.6259
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.16 0.96 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.993 r_dihedral_angle_4_deg 16.663 r_dihedral_angle_3_deg 13.091 r_dihedral_angle_1_deg 6.466 r_scangle_it 6.226 r_scbond_it 4.636 r_mcangle_it 3.378 r_mcbond_it 2.518 r_angle_refined_deg 2.196 r_rigid_bond_restr 2.087
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.993 r_dihedral_angle_4_deg 16.663 r_dihedral_angle_3_deg 13.091 r_dihedral_angle_1_deg 6.466 r_scangle_it 6.226 r_scbond_it 4.636 r_mcangle_it 3.378 r_mcbond_it 2.518 r_angle_refined_deg 2.196 r_rigid_bond_restr 2.087 r_angle_other_deg 1.251 r_mcbond_other 0.91 r_chiral_restr 0.158 r_bond_refined_d 0.026 r_gen_planes_refined 0.015 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4657 Nucleic Acid Atoms Solvent Atoms 463 Heterogen Atoms 3
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing