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Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Fluoroacetate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 15-24% PEG3350, 0.1-0.2M CaCl2 and 0.1M Tris-HCl, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.01 38.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.89 α = 90 b = 79.32 β = 103.43 c = 84.96 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray IMAGE PLATE MAR scanner 345 mm plate 2009-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 95.7 0.087 10.34 82700 -3 20.794
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.54 91.4 0.437 3.13
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 19.08 82700 4127 95.75 0.1859 0.1839 0.1897 0.2234 0.2267 RANDOM 15.3978
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.16 0.69 -0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.987 r_dihedral_angle_4_deg 17.973 r_dihedral_angle_3_deg 14.059 r_dihedral_angle_1_deg 6.503 r_scangle_it 4.296 r_scbond_it 2.88 r_angle_refined_deg 2.082 r_mcangle_it 1.956 r_mcbond_it 1.293 r_angle_other_deg 1.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.987 r_dihedral_angle_4_deg 17.973 r_dihedral_angle_3_deg 14.059 r_dihedral_angle_1_deg 6.503 r_scangle_it 4.296 r_scbond_it 2.88 r_angle_refined_deg 2.082 r_mcangle_it 1.956 r_mcbond_it 1.293 r_angle_other_deg 1.103 r_mcbond_other 0.46 r_chiral_restr 0.138 r_bond_refined_d 0.025 r_gen_planes_refined 0.013 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4649 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms 10
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing