☰ Navigation Tabs
MK2 kinase bound to Compound 5b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 100 mM Tris, 2.3 M AmSO4, pH 8.5, vapor diffusion, hanging drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.1 60.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 139.803 α = 90 b = 180.249 β = 90 c = 217.109 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2008-09-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 51.97 61.3 0.156 5 3.22 74678
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 64.6 0.541 1.9 3.14 7798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.9 51.97 74643 3743 61.28 0.2785 0.2766 0.2818 0.3157 0.3216 RANDOM 100.5853
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.41 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.99 r_dihedral_angle_3_deg 14.715 r_dihedral_angle_4_deg 14.148 r_dihedral_angle_1_deg 4.61 r_angle_refined_deg 0.839 r_angle_other_deg 0.777 r_scangle_it 0.279 r_scbond_it 0.172 r_mcangle_it 0.106 r_mcbond_it 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.99 r_dihedral_angle_3_deg 14.715 r_dihedral_angle_4_deg 14.148 r_dihedral_angle_1_deg 4.61 r_angle_refined_deg 0.839 r_angle_other_deg 0.777 r_scangle_it 0.279 r_scbond_it 0.172 r_mcangle_it 0.106 r_mcbond_it 0.053 r_chiral_restr 0.047 r_mcbond_other 0.017 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26321 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 60
Software Software Software Name Purpose d*TREK data scaling REFMAC refinement PDB_EXTRACT data extraction CrystalClear data collection d*TREK data reduction REFMAC phasing