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3D Structure of ferric methanosarcina acetivorans protoglobin Y61A mutant with unknown ligand
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 277 0.4 monobasic ammonium phosphate, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.21 44.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.089 α = 90 b = 49.239 β = 92.57 c = 51.514 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 51.43 99.6 49084
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 99.8 0.255 3.6 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 41.93 46601 2482 99.47 0.13364 0.13203 0.16399 0.1699 RANDOM 15.739
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.02 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.959 r_dihedral_angle_4_deg 20.495 r_sphericity_free 15.491 r_dihedral_angle_3_deg 14.548 r_sphericity_bonded 9.032 r_scangle_it 6.533 r_dihedral_angle_1_deg 5.577 r_scbond_it 4.945 r_mcangle_it 3.606 r_rigid_bond_restr 3.152
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.959 r_dihedral_angle_4_deg 20.495 r_sphericity_free 15.491 r_dihedral_angle_3_deg 14.548 r_sphericity_bonded 9.032 r_scangle_it 6.533 r_dihedral_angle_1_deg 5.577 r_scbond_it 4.945 r_mcangle_it 3.606 r_rigid_bond_restr 3.152 r_mcbond_it 2.563 r_angle_refined_deg 1.339 r_chiral_restr 0.331 r_bond_refined_d 0.012 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1584 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 59
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling