☰ Navigation Tabs
Crystal structure of a putative superoxide reductase (TM0658) from THERMOTOGA MARITIMA at 1.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 32.70% polyethylene glycol 3000, 0.1M CHES pH 9.0, Additive: 0.001 M cytidine monophosphate (CMP), NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.93 36.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.26 α = 90 b = 54.63 β = 90 c = 88.84 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD double crystal monochromator 2009-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 28.771 98.3 0.062 13.15 51057 -3 6.511
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.1 1.14 96.1 0.537 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.1 28.771 51057 2594 98.34 0.1259 0.1244 0.133 0.1534 0.161 RANDOM 11.7974
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.24 0.61 -0.37
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.801 r_dihedral_angle_4_deg 21.402 r_dihedral_angle_3_deg 11.387 r_sphericity_free 10.529 r_dihedral_angle_1_deg 6.893 r_scangle_it 5.793 r_scbond_it 4.226 r_sphericity_bonded 4.05 r_mcangle_it 3.423 r_mcbond_it 2.536
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.801 r_dihedral_angle_4_deg 21.402 r_dihedral_angle_3_deg 11.387 r_sphericity_free 10.529 r_dihedral_angle_1_deg 6.893 r_scangle_it 5.793 r_scbond_it 4.226 r_sphericity_bonded 4.05 r_mcangle_it 3.423 r_mcbond_it 2.536 r_rigid_bond_restr 2.112 r_angle_refined_deg 1.804 r_mcbond_other 1.607 r_angle_other_deg 1.031 r_chiral_restr 0.122 r_bond_refined_d 0.018 r_gen_planes_refined 0.012 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1058 Nucleic Acid Atoms Solvent Atoms 205 Heterogen Atoms 1
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing XSCALE data scaling REFMAC refinement XDS data reduction SHELXD phasing autoSHARP phasing