☰ Navigation Tabs
Free structure of an anti-methotrexate CDR1-4 Graft VHH Antibody
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293.15 0.2M Lithium Sulfate Monohydrate, 0.1M BIS-TRIS, 25% PEG 3000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.2 44.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.043 α = 90 b = 59.167 β = 92.2 c = 131.425 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR 225 2010-07-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-BM 0.979 APS 22-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 20 99.5 0.089 0.143 3.6 50632
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 20 47518 47518 2525 97.51 0.19163 0.18918 0.1911 0.23828 0.2362 RANDOM 25.869
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.89 0.24 0.81 -1.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.223 r_dihedral_angle_4_deg 19.439 r_dihedral_angle_3_deg 16.058 r_dihedral_angle_1_deg 7.055 r_scangle_it 4.828 r_scbond_it 3.308 r_mcangle_it 2.206 r_angle_refined_deg 1.54 r_mcbond_it 1.35 r_chiral_restr 0.153
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.223 r_dihedral_angle_4_deg 19.439 r_dihedral_angle_3_deg 16.058 r_dihedral_angle_1_deg 7.055 r_scangle_it 4.828 r_scbond_it 3.308 r_mcangle_it 2.206 r_angle_refined_deg 1.54 r_mcbond_it 1.35 r_chiral_restr 0.153 r_bond_refined_d 0.018 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4733 Nucleic Acid Atoms Solvent Atoms 295 Heterogen Atoms 11
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling