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Crystal structure of betaglycan ZP-C domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 16-18% PEG 6000, 0.1 M Citrate, 0.9-1.0M LiCl2, pH 5.0, vapor diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.527 α = 90 b = 63.574 β = 90 c = 107.217 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC Q315r 2009-08-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARCCD 325 2009-04-09 M SINGLE WAVELENGTH 3 1 x-ray 100 CCD MARCCD 325 2009-04-15 M SINGLE WAVELENGTH 4 1 x-ray 100 CCD MARCCD 325 2009-04-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11587 ALS 8.3.1 2 SYNCHROTRON SSRL BEAMLINE BL11-1 1.06698 SSRL BL11-1 3 SYNCHROTRON SSRL BEAMLINE BL9-2 1.13993 SSRL BL9-2 4 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91889 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3,4 1.84 50 98.4 0.076 11 6.5 31736
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.84 1.87 95.7 0.384 3.8 1486
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2 50 25073 1278 98.64 0.189 0.1859 0.2007 0.2453 0.2526 RANDOM 39.447
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.03 0.4 0.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.837 r_dihedral_angle_3_deg 15.369 r_dihedral_angle_4_deg 15.048 r_scangle_it 10.849 r_scbond_it 8.315 r_mcangle_it 7.901 r_dihedral_angle_1_deg 7.519 r_mcbond_it 6.063 r_mcbond_other 2.205 r_angle_refined_deg 1.982
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.837 r_dihedral_angle_3_deg 15.369 r_dihedral_angle_4_deg 15.048 r_scangle_it 10.849 r_scbond_it 8.315 r_mcangle_it 7.901 r_dihedral_angle_1_deg 7.519 r_mcbond_it 6.063 r_mcbond_other 2.205 r_angle_refined_deg 1.982 r_angle_other_deg 1.297 r_chiral_restr 0.203 r_bond_refined_d 0.019 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2664 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 140
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction