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Crystal structure of the Zn-RIDC1 complex stabilized by BMB crosslinks
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 100 mM Bis-TRIS, 14% PEG 3350, 2.84 mM zinc chloride, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.41 49.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.626 α = 90 b = 76.399 β = 90 c = 93.265 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APEX II CCD 2010-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OTHER 1.541
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 22.55 99.4 40145 39905 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.84 1.88 97.9 0.3236 3.19 3.15 2514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.84 22.5 40145 39905 2867 99.44 0.1936 0.1897 0.1914 0.2432 0.2442 RANDOM 19.9313
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.152 r_dihedral_angle_3_deg 17.027 r_dihedral_angle_4_deg 13.708 r_dihedral_angle_1_deg 5.391 r_scangle_it 5.209 r_scbond_it 3.462 r_angle_refined_deg 1.955 r_mcangle_it 1.937 r_mcbond_it 1.142 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.152 r_dihedral_angle_3_deg 17.027 r_dihedral_angle_4_deg 13.708 r_dihedral_angle_1_deg 5.391 r_scangle_it 5.209 r_scbond_it 3.462 r_angle_refined_deg 1.955 r_mcangle_it 1.937 r_mcbond_it 1.142 r_chiral_restr 0.122 r_bond_refined_d 0.024 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3284 Nucleic Acid Atoms Solvent Atoms 426 Heterogen Atoms 240
Software Software Software Name Purpose SAINT data scaling SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction APEX data collection SAINT data reduction MOLREP phasing