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The structure of olei00960, a hydrolase from Oleispira antarctica
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1WOM Model based on 1wom
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 294 0.05M Calcium Chloride, 0.1M Bis-Tris pH6.5, 1.6M Ammonium Sulfate. Cryoprotected with Paratone-N oil, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.96 58.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.067 α = 90 b = 123.067 β = 90 c = 49.218 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 mirrors 2009-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97918 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 0.122 24.75 7.7 50364 50298 -3 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 99 0.531 4.13 7.1 2463
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION PHASER Model based on 1wom 1.998 30.767 0.91 96971 3906 99.09 0.1571 0.1558 0.1494 0.1847 0.1798 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.3106 -3.3106 6.6212
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.342 f_angle_d 0.964 f_chiral_restr 0.069 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4265 Nucleic Acid Atoms Solvent Atoms 240 Heterogen Atoms 29
Software Software Software Name Purpose PHENIX refinement PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling HKL-3000 data collection