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Structure of Thermus Thermophilus Cse3 bound to an RNA representing a pre-cleavage complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 vapour diffusion, hanging drop 7.5 298 15% PEG 3350, 100mM KOAc, 1mM spermidine, pH 7.5, vapour diffusion, hanging drop, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.32 46.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.5 α = 90 b = 68.91 β = 90 c = 158.063 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2010-06-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97945 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.194 45.884 97.6 0.168 5.5 7.8 5874 5725 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.194 3.31 89.4 0.412 3.7 514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.194 45.884 5586 5724 272 97.41 0.2129 0.2101 0.2119 0.2663 0.2711 RANDOM 46.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.3 -2.18 2.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.704 r_dihedral_angle_3_deg 16.893 r_dihedral_angle_4_deg 16.597 r_dihedral_angle_1_deg 5.178 r_angle_refined_deg 1.008 r_scangle_it 0.937 r_mcangle_it 0.503 r_scbond_it 0.475 r_nbtor_refined 0.301 r_mcbond_it 0.278
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.704 r_dihedral_angle_3_deg 16.893 r_dihedral_angle_4_deg 16.597 r_dihedral_angle_1_deg 5.178 r_angle_refined_deg 1.008 r_scangle_it 0.937 r_mcangle_it 0.503 r_scbond_it 0.475 r_nbtor_refined 0.301 r_mcbond_it 0.278 r_nbd_refined 0.185 r_symmetry_vdw_refined 0.145 r_chiral_restr 0.127 r_symmetry_hbond_refined 0.122 r_xyhbond_nbd_refined 0.111 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1631 Nucleic Acid Atoms 404 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection