☰ Navigation Tabs
Anthranilate phosphoribosyltransferase (TRPD) from Mycobacterium tuberculosis (complex with inhibitor ACS172)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZVW PDB entry 1zvw
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 0.2 M cacodylate, 7% PEG6000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.28 45.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.929 α = 90 b = 78.213 β = 111.01 c = 101.702 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate 2009-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE OTHER 1.541790
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 94.9 99.1 0.091 0.106 3.7 97403 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.08 97.8 0.72 0.84 2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1zvw 1.97 88.75 13968 92535 4845 98.97 0.21814 0.21592 0.25925 0.2277 RANDOM 26.272
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 -0.33 -0.88 0.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.112 r_dihedral_angle_4_deg 20.11 r_dihedral_angle_3_deg 14.951 r_dihedral_angle_1_deg 5.675 r_scangle_it 3.158 r_scbond_it 1.994 r_angle_refined_deg 1.456 r_mcangle_it 1.328 r_mcbond_it 0.742 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.112 r_dihedral_angle_4_deg 20.11 r_dihedral_angle_3_deg 14.951 r_dihedral_angle_1_deg 5.675 r_scangle_it 3.158 r_scbond_it 1.994 r_angle_refined_deg 1.456 r_mcangle_it 1.328 r_mcbond_it 0.742 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9898 Nucleic Acid Atoms Solvent Atoms 601 Heterogen Atoms 213
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection XDS data reduction SCALA data scaling MOLREP phasing