☰ Navigation Tabs
Crystal Structure of 4'-Phosphopantetheinyl Transferase AcpS from Vibrio cholerae O1 biovar eltor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 289 30% MPD, 0.1 M Sodium Acetate pH 4.6, 20 mM Calcium Chloride, 5 mM Coenzyme A, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.65 53.66
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.553 α = 90 b = 139.039 β = 93.72 c = 138.319 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r mirrors 2009-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 45.55 99.4 0.091 7.7 3.7 300465 300465 23.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.88 99.7 0.54 2 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 29.89 284976 284976 15148 99.24 0.15791 0.15615 0.1701 0.19127 0.2043 RANDOM 27.607
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.38 0.86 -0.09 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.431 r_dihedral_angle_3_deg 8.408 r_dihedral_angle_4_deg 8.194 r_scangle_it 4.712 r_scbond_it 2.783 r_dihedral_angle_1_deg 2.241 r_angle_refined_deg 1.755 r_mcangle_it 1.463 r_angle_other_deg 0.854 r_mcbond_it 0.745
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.431 r_dihedral_angle_3_deg 8.408 r_dihedral_angle_4_deg 8.194 r_scangle_it 4.712 r_scbond_it 2.783 r_dihedral_angle_1_deg 2.241 r_angle_refined_deg 1.755 r_mcangle_it 1.463 r_angle_other_deg 0.854 r_mcbond_it 0.745 r_mcbond_other 0.229 r_chiral_restr 0.102 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 23277 Nucleic Acid Atoms Solvent Atoms 2487 Heterogen Atoms 1442
Software Software Software Name Purpose SBC-Collect data collection HKL-3000 phasing SHELXS phasing MLPHARE phasing RESOLVE model building SOLVE phasing PHENIX model building REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling RESOLVE phasing PHENIX phasing