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Crystal strucuture of an inositol monophosphatase family protein (SAS2203) from Staphylococcus aureus MSSA476
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2P3N PDB ENTRY 2P3N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 0.2M Lithium sulphate, 0.1M HEPES pH 7.0, 20%(w/v) PEG 3350, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.95 36.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.983 α = 90 b = 68.35 β = 90 c = 143.787 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ mirrors 2010-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.597 71.894 15862 15691 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2P3N 2.6 19.67 15690 785 98.95 0.1984 0.1947 0.1973 0.269 0.2703 RANDOM 36.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.48 -2.32 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.632 r_dihedral_angle_3_deg 19.395 r_dihedral_angle_4_deg 17.895 r_dihedral_angle_1_deg 7.52 r_scangle_it 2.663 r_scbond_it 1.67 r_angle_refined_deg 1.612 r_mcangle_it 1.083 r_mcbond_it 0.57 r_chiral_restr 0.109
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.632 r_dihedral_angle_3_deg 19.395 r_dihedral_angle_4_deg 17.895 r_dihedral_angle_1_deg 7.52 r_scangle_it 2.663 r_scbond_it 1.67 r_angle_refined_deg 1.612 r_mcangle_it 1.083 r_mcbond_it 0.57 r_chiral_restr 0.109 r_bond_refined_d 0.014 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3992 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection XDS data reduction SCALA data scaling AMoRE phasing